Changes in version 0.1.6 (2026-07-21) - Removed reshape2 dependency; replaced with base R equivalents (tapply, as.data.frame.table). - Fixed theme_ridges() partial argument match (center → center_axis_labels). - Fixed parallel log file leak in null_model_parallel using tempfile() and on.exit(). - Refactored selectX() to eliminate duplicate verbose/non-verbose code paths. - Added utils::globalVariables() declarations to suppress R CMD check NOTEs for ggplot2 aesthetics. - Dropped SystemRequirements: C++14 from DESCRIPTION. - Added GitHub community health files: CONTRIBUTING.md, CODE_OF_CONDUCT.md, issue templates, PR template, and CI workflow. - Expanded test coverage with test-gam_utils.R. - Repository migrated: development moved from personal branches to CSOgroup/SelectSim; dev branch merged into main for initial public release. - Bumped version to 0.1.6 across all source files - Updated citation (inst/CITATION, README) to the published Nature Genetics article: Iyer A, Petrovic M, Sesia D, Nanni L, Mina M, Ciriello G (2026). Evolving patterns of co-mutations from tumor initiation to metastatic progression. Nature Genetics. DOI: 10.1038/s41588-026-02661-4 Changes in version 0.0.1.5 - Fixed bug of outlier functions and added C/C++ code back. - More description in functions Changes in version 0.0.1.4 - Added Mijan to the author list. - Removed the C/C++ code dependency to avoid installation difficulties across systems. - Moved to Matrix package functions and removed the Rcpp functions and compiled code. - Updated the website and vignette accordingly. Changes in version 0.0.1.3 - Added a NEWS.md file to track changes to the package. - Renamed the package to SelectSim by creating a new Git repository. - Created the CSOgroup repository and moved the code there. - Created the GitHub website.