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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SelectSim" in publications use:'
type: software
license: MIT
title: 'SelectSim: Selected Events Linked by Evolutionary Conditions in Cancer'
version: 0.1.6
doi: 10.1038/s41588-026-02661-4
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SelectSim
abstract: Implements the 'SelectSim' methodology for identifying patterns of co-occurrence
  and mutual exclusivity between functional genomic alterations in cancer cohorts.
  The package processes mutation annotation data, constructs alteration matrices,
  estimates expected alteration-pair frequencies, and quantifies deviations associated
  with selective interactions. The methodology is described in Iyer et al. (2026)
  <https://doi.org/10.1038/s41588-026-02661-4>.
authors:
- family-names: Iyer
  given-names: Arvind
  email: ayalurarvind@gmail.com
  orcid: https://orcid.org/0000-0002-8247-700X
- family-names: Mina
  given-names: Marco
  email: marco.mina.85@gmail.com
- family-names: Petrovic
  given-names: Miljan
  email: miljanpet93@gmail.com
- family-names: Ciriello
  given-names: Giovanni
  email: giovanni.ciriello@unil.ch
  orcid: https://orcid.org/0000-0003-2021-8683
preferred-citation:
  type: article
  title: Evolving patterns of co-mutations from tumor initiation to metastatic progression
  authors:
  - family-names: Iyer
    given-names: Arvind
    email: ayalurarvind@gmail.com
    orcid: https://orcid.org/0000-0002-8247-700X
  - family-names: Petrovic
    given-names: Miljan
    email: miljanpet93@gmail.com
  - family-names: Sesia
    given-names: Debora
  - family-names: Nanni
    given-names: Luca
  - family-names: Mina
    given-names: Marco
    email: marco.mina.85@gmail.com
  - family-names: Ciriello
    given-names: Giovanni
    email: giovanni.ciriello@unil.ch
    orcid: https://orcid.org/0000-0003-2021-8683
  journal: Nature Genetics
  year: '2026'
  doi: 10.1038/s41588-026-02661-4
  url: https://doi.org/10.1038/s41588-026-02661-4
repository: https://csogroup.r-universe.dev
repository-code: https://github.com/CSOgroup/SelectSim
commit: 54c06ec5f77441937726ca62c10781b3775d6890
url: https://csogroup.github.io/SelectSim/
date-released: '2026-07-12'
contact:
- family-names: Iyer
  given-names: Arvind
  email: ayalurarvind@gmail.com
  orcid: https://orcid.org/0000-0002-8247-700X